This event feed aggregates content from the Research Events feeds from the Helsinki Institute for Information Technology HIIT, Aalto University Department of Computer Science, and the University of Helsinki Department of Computer Science.
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13.04.2012 12:00–16:00
Defence of thesis
University of Helsinki Main Building, Auditorium XIV, Unioninkatu 34
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22.03.2012 16:15–18:00
Seminar
Exactum B119The program consists of a talk by Veli Mäkinen:
Title: Multi-pattern matching with bidirectional indexes
Abstract:
We study multi-pattern matching in a scenario where the pattern set is to be matched to several texts and hence indexing the pattern set is affordable. This kind of scenarious arise e.g. in metagenomics, where pattern set represents DNA of several species and the goal is to find out which...
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08.03.2012 17:00–21:00
Alumni event
Exactum, Lars Ahlfors-sali A111
Tiedettä parhaassa seurassa Matemaattis-luonnontieteellinen tiedekunta kutsuu tiedekunnan kasvatit Kumpulan tiedekampuksen alumnitapahtumaan torstaina 8.3.2012 klo 17.00–21.00.Kolmatta kertaa kokoamme kaikkien laitostemme alumnit yhteiseen tilaisuuteen teemalla "Tiedettä parhaassa seurassa". Tule verkostoitumaan ja tapaamaan vanhoja opiskelukavereitasi, entisiä opettajiasi ja...
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08.03.2012 15:15–17:00
Seminar
Exactum B222The program consists of a talk by Leena Salmela:
Title: Fast Scaffolding with Small Independent Mixed Integer Programs
Abstract:
Assembling genomes from short read data has become increasingly popular but the problem remains computationally challenging especially for larger genomes. We study the scaffolding phase of sequence assembly where preassembled contigs are ordered based on mate pair data. We present...
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23.02.2012 16:15–18:00
Seminar
Exactum B119The program consists of a talk by Travis Gagie (Aalto University):
Title: A Faster Grammar-Based Self-Index
Authors: Travis Gagie, Pawel Gawrychowski, Juha Kärkkäinen, Yakov Nekrich and Simon J. Puglisi
Abstract:
To store and search genomic databases efficiently, researchers have recently started building compressed self-indexes based on straight-line programs and LZ77. In this paper we show... -
23.02.2012 10:15–12:00
Seminar
C222Project in String Processing Algorithms concludes with presentations:
10.15 Jani Rahkola: "Speeding up generalized edit distance calculation using Aho-Corasick automaton" 10.50 Huining Deng and Dominik Kempa: "Optimal algorithm for Maximal Exact Matches problem" 11.25 Anna Kuosmanen: "Limited range query in mapping mate-pair DNA reads"Welcome!
Veli
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22.02.2012 13:00–13:25
Guest lecture
Exactum CK107Public teaching demonstrations will be given by applicants for the
position of lecturer (computer science, software engineering) as follows:- Graham Wilcock: Web frameworks and cloud datastores: How to build a
web app for the cloud
Wednesday 22 February at 13:00 - 13:25, Exactum CK107- Antti-Pekka Tuovinen: Ohjelmistoarkkitehdin työnkuva
Monday 27 February at 13:00 - 13:25,... -
10.02.2012 10:15–11:15
HIIT seminar
Kumpula Exactum B120
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03.02.2012 12:00–16:00
Defence of thesis
University of Helsinki Main Building, Auditorium XII, Unioninkatu 34
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03.02.2012 10:15–11:15
HIIT seminar
Kumpula Exactum C222
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